pheatmap formatting in R: Legend size and creating a square plot
4 Pheatmap only creates a square plot when legend=FALSE. I have tried using par () to allow more oma () and mar () space without luck. The legend is also really big and i cannot find any …
r - Pheatmap won’t cluster rows: NA/NaN/Inf in foreign function …
Apr 27, 2020 · I have been using the same variations of a pheatmap code to make heat maps for several months now without any problems, but lately it has stopped being able to cluster rows. …
Pheatmap in R: Setting Fixed Limits of Heatmap Legend
Jan 17, 2024 · I am working in R with the pheatmap library. I am creating heatmaps for different timepoints for the same population, so I want the legend scale to be fixed (from -2 to 2) for …
heatmap in R how to resize columns labels? - Stack Overflow
Feb 27, 2017 · You may change fontsize_col for the column labels. You have many interesting options like display_numbers to have the values inside the cells of your heatmap. Just read …
pheatmap in R. How to split data into groups and then cluster
Feb 1, 2024 · pheatmap in R. How to split data into groups and then cluster Asked 1 year, 11 months ago Modified 1 year, 11 months ago Viewed 2k times
r - Pheatmap annotation colors and border - Stack Overflow
Oct 23, 2015 · Pheatmap library (pheatmap) takes annotation_colorsto add the header ID colors on the top of each heatmap column. I want to add white as column header color with borders. …
r - order pheatmap by annotation - Stack Overflow
Sep 5, 2019 · I am attempting to make a figure using the package pheatmap. I would like to group the data by the annotation that I am using, but it won't group together. My data is here: …
R pheatmap: change annotation colors and prevent graphics …
So my question here is: How do I specify annotation_colors in pheatmap?? On the other hand, even when I am saving the pheatmap output in a png file, the graphics window keeps popping …
How to draw pheatmap plot to screen and also save to file
I'm working with the pheatmap package. By default, it draws the plot to the screen. In my case, that means output in a R markdown notebook in R studio. But I also want to save to a file. If I …
r - Modifying Continuous Legend in Pheatmap - Stack Overflow
Dec 27, 2023 · I am having issues with pheatmap legend annotations. I want to annotate my columns with metadata from my coldata (working with RNAseq, DESeq2). DESeq2: dds <- …